Flavobacterium gilvum strain EM1308

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Flavobacterium

Description

Flavobacterium gilvum strain EM1308 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is non-motile and possesses flagella, which may play a role in its life cycle or environmental interactions despite lacking mobility. The optimal growth temperature for F. gilvum strain EM1308 is 29°C, placing it within the mesophilic temperature range suitable for growth in moderately warm environments. This strain has a single replicon, which indicates a streamlined genomic organization that may facilitate efficient replication and adaptation to environmental conditions. The accession number for this strain is JNCP00000000.1, which provides a reference for further genomic studies or comparisons with related bacterial strains. The ecological implications of F. gilvum strain EM1308 may be significant, particularly in the context of nutrient cycling and biodegradation processes in its natural habitat. As a member of the Flavobacteriaceae family, it is likely involved in the degradation of complex organic materials, contributing to the health of ecosystems where it resides. Its aerobic nature suggests a role in processes that require oxygen, potentially influencing the dynamics of microbial communities in various ecological niches.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFlavobacterium
SpeciesFlavobacterium gilvum
Strainstrain EM1308

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceYes
Number of membranesNot Available
Image of Flavobacterium gilvum strain EM1308
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Flavobacterium gilvum strain EM1308 contig00215, whole genome

Gene Summary

Adenine Count

1402858 bp

Thymine Count

1401907 bp

Guanine Count

770024 bp

Cytosine Count

747181 bp

Genome Length

4321991 bp

Protein-coding Genes

3661 genes

Non-Coding Genes

45 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycogen debranching enzymeFEM08_12920Not AvailableNegative1490634 - 1494266135898.0
rhamnogalacturonan acetylesteraseFEM08_12930Not AvailablePositive1494644 - 149596649424.5
beta-galactosidaseFEM08_12940Not AvailablePositive1495986 - 1498838107454.0
rhamnogalacturonan acetylesteraseFEM08_12950Not AvailablePositive1498963 - 150047156246.9
glycoside hydrolase family 2 sugar binding proteinFEM08_12960Not AvailableNegative1500635 - 150297187258.9
arylsulfataseFEM08_12970Not AvailableNegative1502993 - 150436652222.9
glycosyhydrolaseFEM08_12980Not AvailableNegative1504556 - 150698593065.9
hypothetical proteinFEM08_12990Not AvailableNegative1507213 - 15073474792.82
glycoside hydrolaseFEM08_13000Not AvailableNegative1507420 - 150874849553.3
glycosyl hydrolase family 43FEM08_13010Not AvailableNegative1508838 - 151029254248.3

Displaying genes 1311 – 1320 of 3706 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.