Bifidobacterium tsurumiense strain JCM 13495

rodanaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Bifidobacteriales

Family

Bifidobacteriaceae

Genus

Bifidobacterium

Description

Bifidobacterium tsurumiense strain JCM 13495 is a Gram-positive, anaerobic bacterium characterized by its rod shape. This strain is mesophilic, with an optimal growth temperature of 37 degrees Celsius. B. tsurumiense is notable for possessing true flagella, which may play a role in its motility and ecological interactions. The strain has a single replicon, indicating a simplified genomic organization that can be advantageous for its adaptation in specific environments. The accession number for B. tsurumiense strain JCM 13495 is JGZU00000000.1, which provides a reference for researchers seeking genomic information about this organism. In terms of its ecological role, Bifidobacterium species are commonly associated with the gastrointestinal tracts of humans and animals, where they contribute to the maintenance of gut health and the modulation of the microbiota. The presence of flagella in this strain may facilitate its colonization and persistence in the gut environment, potentially enhancing its interactions with other microbial communities and influencing host health. The specific traits of B. tsurumiense strain JCM 13495 highlight its potential significance in studying gut microbiota dynamics and the functional roles of anaerobic bacteria within this ecosystem.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderBifidobacteriales
FamilyBifidobacteriaceae
GenusBifidobacterium
SpeciesBifidobacterium tsurumiense
Strainstrain JCM 13495

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bifidobacterium tsurumiense strain JCM 13495
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bifidobacterium tsurumiense strain JCM 13495


Gene Summary

Adenine Count

514264 bp

Thymine Count

506347 bp

Guanine Count

560141 bp

Cytosine Count

583646 bp

Genome Length

2164426 bp

Protein-coding Genes

1629 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinBITS_1694Not AvailableNegative95 - 138148698.4
cell division ftsk/spoiiieBITS_1696Not AvailablePositive1835 - 301043313.2
replication protein repbBITS_1697Not AvailablePositive3003 - 383331741.0
type ii site-specific deoxyribonucleaseBITS_1699Not AvailablePositive4223 - 518236537.0
methyltransferase protein domainBITS_1700Not AvailablePositive5172 - 662054540.5
is3509a transposaseBITS_1704Not AvailableNegative8293 - 942943753.8
hypothetical proteinBITS_1705Not AvailableNegative9620 - 1074441667.2
response regulator of two-component systemBITS_1706Not AvailableNegative10943 - 1161123839.6
glycine hydroxymethyltransferaseBITS_1708Not AvailableNegative11939 - 1324346574.6
hypothetical proteinBITS_1710Not AvailableNegative13585 - 138098337.02

Displaying genes 1 – 10 of 1681 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

166 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000403(S)-acetoinC4H8O2Chemical structure of (S)-acetoinNot available
Average88.1051Da
Monoisotopic88.0524295Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da

Displaying 1–10 of 166 metabolites

Health Effects

No health effects information available for this bacterium.