Streptomyces toyocaensis strain NRRL 15009

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Kitasatosporales

Family

Streptomycetaceae

Genus

Streptomyces

Description

Streptomyces toyocaensis strain NRRL 15009 is a notable actinobacterium characterized by the presence of flagella, which contribute to its motility. This strain is significant within the genus Streptomyces, known for its ability to produce a wide variety of bioactive compounds, including antibiotics. The genetic information for S. toyocaensis NRRL 15009 is encapsulated in a single replicon, indicating a streamlined genomic structure, which can be advantageous for the organism's adaptability and efficiency in resource utilization. The complete genome of this strain is documented under the accession number JFCB00000000.1, providing a reference point for researchers interested in studying its genetic makeup and potential applications in biotechnology. In ecological terms, Streptomyces species, including S. toyocaensis, play a vital role in soil health and nutrient cycling. Their ability to decompose organic matter and produce antimicrobial substances contributes to the suppression of soil-borne pathogens, thereby promoting plant health. This ecological function underscores the importance of S. toyocaensis in agricultural systems and its potential utility in sustainable farming practices, emphasizing the need for further research into its applications in biocontrol and natural product discovery.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces toyocaensis
Strainstrain NRRL 15009

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Streptomyces toyocaensis strain NRRL 15009
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Streptomyces toyocaensis strain NRRL 15009


Gene Summary

Adenine Count

1031397 bp

Thymine Count

1021100 bp

Guanine Count

2628962 bp

Cytosine Count

2659555 bp

Genome Length

7341014 bp

Protein-coding Genes

6315 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s ribosomal rnaNot AvailableNot AvailablePositive18 - 3167Not Available
16s ribosomal rnaNot AvailableNot AvailablePositive97 - 1628Not Available
membrane proteinBU52_00010Not AvailableNegative180 - 96226714.5
endonucleaseBU52_00015Not AvailableNegative1074 - 237847297.1
neutral/alkaline nonlysosomal ceramidaseBU52_00020Not AvailableNegative2530 - 459074435.2
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive5846 - 6253Not Available
arabinose abc transporter permeaseBU52_00025Not AvailableNegative4826 - 600138231.1
peptidyl-trna hydrolaseBU52_00030Not AvailableNegative6127 - 685826361.2
hypothetical proteinBU52_00035Not AvailableNegative6893 - 70786763.88
hypothetical proteinBU52_00045Not AvailableNegative7690 - 855330397.3

Displaying genes 1 – 10 of 6385 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0004092UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineC41H61N9O28P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanineNot available
Average1189.924Da
Monoisotopic1189.312320676Da
BASm0007003UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioateC35H51N7O26P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioateNot available
Average1047.7583Da
Monoisotopic1047.235898Da
BASm0017292Phosphoadenosine phosphosulfateC10H15N5O13P2SChemical structure of Phosphoadenosine phosphosulfate482-67-7
Average507.264Da
Monoisotopic506.986229305Da

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.