Sorangium cellulosum strain So0163

Gram-negative

Kingdom

Pseudomonadati

Phylum

Myxococcota

Class

Order

Polyangiales

Family

Polyangiaceae

Genus

Sorangium

Description

Sorangium cellulosum strain So0163 is a Gram-negative bacterium primarily found in the rhizosphere, which is the region of soil associated with plant roots. This ecological niche is crucial for plant health, as it supports various microbial interactions that can influence nutrient availability and plant growth. The strain has a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in its habitat. The genomic data for Sorangium cellulosum strain So0163 is cataloged under the accession number JEMD00000000.1, which allows for further exploration and understanding of its genetic makeup and potential functionalities. The presence of Sorangium cellulosum in the rhizosphere suggests its role in soil ecology, potentially involving interactions with plants and other microorganisms. Such interactions can enhance soil health by promoting nutrient cycling and improving plant resilience against pathogens. Understanding the specific functions and mechanisms of this strain may provide insights into its contributions to soil ecosystems and its potential applications in agriculture and biotechnology.

Taxonomy

KingdomPseudomonadati
PhylumMyxococcota
Class/taxonomy?kingdom=Pseudomonadati&level=klass&phylum=Myxococcota
OrderPolyangiales
FamilyPolyangiaceae
GenusSorangium
SpeciesSorangium cellulosum
Strainstrain So0163

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sorangium cellulosum strain So0163


Gene Summary

Adenine Count

1919617 bp

Thymine Count

1916515 bp

Guanine Count

4954462 bp

Cytosine Count

4949519 bp

Genome Length

13740113 bp

Protein-coding Genes

9169 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s ribosomal rnaNot AvailableNot AvailablePositive5 - 1570Not Available
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive6281 - 6745Not Available
hypothetical proteinBE20_47480Not AvailablePositive26601 - 2695511826.9
hypothetical proteinBE20_47630Not AvailableNegative38503 - 3884412010.2
hypothetical proteinBE20_47715Not AvailablePositive46042 - 4642214166.5
hypothetical proteinBE20_47750Not AvailableNegative48977 - 4928210940.3
hypothetical proteinBE20_47800Not AvailablePositive53536 - 5393313583.1
hypothetical proteinBE20_47910Not AvailablePositive64015 - 642818987.15
hypothetical proteinBE20_47915Not AvailablePositive64477 - 6480011364.6
hypothetical proteinBE20_48015Not AvailableNegative73868 - 7430815439.6

Displaying genes 1 – 10 of 9225 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1753 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 1753 metabolites

Health Effects

No health effects information available for this bacterium.