Sphingobium cupriresistens LL01 25410_21

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium cupriresistens LL01 (accession JACT00000000.1) is a notable member of the Sphingobium genus, characterized by the presence of flagella, which suggests a motile lifestyle. This trait may enhance its ability to navigate through various environments and potentially contribute to its ecological interactions. The organism has a single replicon, indicating a streamlined genomic structure that might be advantageous for adaptability and survival in diverse conditions. This genomic characteristic could facilitate efficient replication and resource management, important traits for microbes in fluctuating environments. Sphingobium cupriresistens LL01 is particularly interesting due to its resistance to copper, a heavy metal that can be toxic to many organisms. This resistance may allow it to thrive in environments contaminated with copper, such as industrial sites or areas impacted by mining activities. The ability to resist heavy metals not only highlights the organism's potential for bioremediation applications but also emphasizes its ecological role in maintaining microbial diversity and functionality in polluted ecosystems. Overall, Sphingobium cupriresistens LL01 exemplifies the adaptability of microorganisms to extreme conditions and underscores the importance of studying such organisms in understanding ecological dynamics and potential biotechnological applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium cupriresistens
StrainLL01 25410_21

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium cupriresistens LL01 25410_21


Gene Summary

Adenine Count

848540 bp

Thymine Count

845495 bp

Guanine Count

1475879 bp

Cytosine Count

1485579 bp

Genome Length

4655494 bp

Protein-coding Genes

4532 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Gp5, phage portal protein, pbsx familyV473_10770P25480Negative2161780 - 216242723621.0
transposase is4V473_10775Not AvailableNegative2162709 - 216405849421.6
Portal proteinV473_10780P21314Negative2164159 - 216446411215.5
Gp4, phage terminase, atpase subunitV473_10785P25479Negative2164461 - 216629969085.8
Gpo family capsid scaffolding proteinV473_10790P51719Positive2166459 - 216730430209.3
Major capsid protein, p2 familyV473_10795P25477Positive2167353 - 216840238834.9
Terminase endonuclease subunitV473_10800Not AvailablePositive2168522 - 216924725934.1
hypothetical proteinV473_10805Not AvailablePositive2169365 - 21695927859.18
Putative head completion proteinV473_10810P25475Positive2169589 - 217007116889.1
tail proteinV473_10815Not AvailablePositive2170071 - 21703047974.67

Displaying genes 1 – 10 of 4655 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

340 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000228(3R,4S,5S,6R)-pentachlorocyclohexeneC6H5Cl5Chemical structure of (3R,4S,5S,6R)-pentachlorocyclohexeneNot available
Average254.36Da
Monoisotopic251.8833887Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000333(1R,4R)-bornane-2,5-dioneC10H14O2Chemical structure of (1R,4R)-bornane-2,5-dioneNot available
Average166.22Da
Monoisotopic166.0993797Da

Displaying 1–10 of 340 metabolites

Health Effects

No health effects information available for this bacterium.