Rathayibacter sp. VKM Ac-2121

Rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Rathayibacter

Description

Rathayibacter sp. VKM Ac-2121 is a Gram-positive bacterium characterized by its rod shape. This species is notable for having a single replicon, which may influence its genetic stability and replication process. The accession number for this strain is FXBM00000000.1, which is essential for researchers seeking to access its genomic data for further study. The Gram-positive nature of Rathayibacter sp. VKM Ac-2121 suggests it possesses a thick peptidoglycan layer in its cell wall, which plays a crucial role in its structural integrity and can influence its interactions with the environment and other organisms. Gram-positive bacteria are often involved in various ecological roles, including soil health, plant interactions, and biogeochemical cycling. Given its classification and traits, Rathayibacter sp. VKM Ac-2121 may contribute to the dynamics of microbial communities, particularly in association with plants, as members of the Rathayibacter genus are known to be involved in plant-pathogen interactions. Understanding the specific ecological roles of this bacterium could provide insights into its potential impacts on agriculture and ecosystem functioning. Additionally, its unique genetic characteristics may lead to further explorations of its applications in biotechnology or agriculture, highlighting the importance of studying such microorganisms within their ecological contexts.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusRathayibacter
SpeciesRathayibacter oskolensis
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rathayibacter sp. VKM Ac-2121


Gene Summary

Adenine Count

556454 bp

Thymine Count

562817 bp

Guanine Count

1415120 bp

Cytosine Count

1412069 bp

Genome Length

3946460 bp

Protein-coding Genes

3628 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s ribosomal rna . bacterial ssuNot AvailableNot AvailablePositive247 - 177318.01
hypothetical proteinSAMN06295885_0001Not AvailableNegative1 - 2609307.96
threonine dehydrogenaseSAMN06295885_0002Not AvailablePositive471 - 161040893.1
hypothetical proteinSAMN06295885_0003Not AvailablePositive1619 - 218520628.7
23s ribosomal rna . bacterial lsuNot AvailableNot AvailablePositive2219 - 533918.01
dioxygenaseSAMN06295885_0004Not AvailableNegative2241 - 318231684.4
molybdate transport system substrate-binding proteinSAMN06295885_0005Not AvailableNegative3323 - 408724822.8
phosphoglycerate dehydrogenaseSAMN06295885_0006Not AvailablePositive4272 - 532437530.4
atp-dependent rna helicase csdaSAMN06295885_0007Not AvailablePositive5430 - 725966933.5
5s ribosomal rna . bacterial tsuNot AvailableNot AvailablePositive5533 - 564918.01

Displaying genes 1 – 10 of 3677 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

155 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00006473-hydroxypropanoateC3H5O3Chemical structure of 3-hydroxypropanoateNot available
Average89.071Da
Monoisotopic89.0244176Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da

Displaying 1–10 of 155 metabolites

Health Effects

No health effects information available for this bacterium.