Fibrobacter sp. UWB13

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Fibrobacterota

Class

Fibrobacteria

Order

Fibrobacterales

Family

Fibrobacteraceae

Genus

Fibrobacter

Description

Fibrobacter sp. UWB13 is a Gram-negative, rod-shaped bacterium characterized by the presence of flagella, which suggests motility. This organism has a single replicon, indicating a simplified genetic structure that is typical among certain bacterial species. The accession number for Fibrobacter sp. UWB13 is FXAX00000000.1, which serves as a unique identifier for genetic and genomic studies. The traits of Fibrobacter sp. UWB13 position it within the diverse ecosystem of microbial life, particularly in environments where cellulose degradation is crucial. Fibrobacter species are known for their role in breaking down plant materials, which significantly contributes to nutrient cycling in various habitats. The motility facilitated by flagella may enhance the bacterium's ability to colonize and thrive in fluctuating environments, potentially leading to increased efficiency in cellulose degradation. In summary, the combination of its Gram-negative status, rod shape, motility, and single replicon structure underscores the adaptive capabilities of Fibrobacter sp. UWB13. Such traits may play a vital role in its ecological niche, particularly in anaerobic environments where plant biomass decomposition occurs. Understanding these characteristics can provide insight into the ecological roles of similar microorganisms in nutrient cycling and their potential applications in biotechnological processes related to biomass conversion.

Taxonomy

KingdomPseudomonadati
PhylumFibrobacterota
ClassFibrobacteria
OrderFibrobacterales
FamilyFibrobacteraceae
GenusFibrobacter
SpeciesFibrobacter sp. UWB13
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Fibrobacter sp. UWB13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Fibrobacter sp. UWB13 genome assembly, contig: Ga0136277_110,

Gene Summary

Adenine Count

1023895 bp

Thymine Count

957354 bp

Guanine Count

871482 bp

Cytosine Count

951915 bp

Genome Length

3804669 bp

Protein-coding Genes

3084 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycosyl hydrolases family 8SAMN05720489_2140Not AvailableNegative2522855 - 252503878227.3
signal transduction histidine kinaseSAMN05720489_2141Not AvailableNegative2525182 - 252746785725.4
response regulator c-di-gmp phosphodiesterase, rpfg family, contains rec and hd-gyp domainsSAMN05720489_2142Not AvailablePositive2527674 - 252920057908.2
hpt (histidine-containing phosphotransfer) domain-containing proteinSAMN05720489_2143Not AvailablePositive2529210 - 252956012501.8
his kinase a (phospho-acceptor) domain-containing proteinSAMN05720489_2144Not AvailableNegative2529613 - 253199790512.1
peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domainsSAMN05720489_2145Not AvailableNegative2532116 - 253326444027.0
response regulator c-di-gmp phosphodiesterase, rpfg family, contains rec and hd-gyp domainsSAMN05720489_2146Not AvailablePositive2533420 - 253494058312.7
signal transduction histidine kinaseSAMN05720489_2147Not AvailableNegative2535088 - 2538723139247.0
endo-1,4-beta-xylanase, gh35 familySAMN05720489_2148Not AvailableNegative2538912 - 254067864942.6
endo-1,4-beta-xylanase, gh35 familySAMN05720489_2149Not AvailableNegative2540937 - 254276366253.2

Displaying genes 2121 – 2130 of 2420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.