Fibrobacter succinogenes subsp. succinogenes S85

Gram-negativeRodNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Fibrobacterota

Class

Fibrobacteria

Order

Fibrobacterales

Family

Fibrobacteraceae

Genus

Fibrobacter

Description

Fibrobacter succinogenes (strain ATCC 19169 / S85) is an anaerobic, cellulolytic Gram-negative bacterium. It is one of the three most predominant cellulolytic organisms in the rumen. F. succinogenes is highly specialized for cellulose degradation, and is only capable of utilizing cellulose and cellulolytic degradation products as carbon sources. Access to cellulose is a rate-liming step in degradation, and F. succinogenes has devised a number of mechanisms for improving access to this insoluble substrate, one of which is the production of surface-localized cellulases. The active enzymes are cell wall associated, but the presence of cellulosomes, large multiprotein cellulase complexes, has not been detected in this organism. Adherence is another method used to promote cellulose degradation, and this organism produces an extracellular matrix of glycoprotein glycocalyx which allows attachment to insoluble cellulose. In addition, the glycocalyx protects against protozoan attack of the bacterium as well as protease attack of the cellulase enzymes. Increasing cellulose degradation is an important goal in industrial processes. (Adaptated from: http://www.ncbi.nlm.nih.gov/sites/entrez?Db=genomeprj&cmd=ShowDetailView&TermToSearch=32617). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumFibrobacterota
ClassFibrobacteria
OrderFibrobacterales
FamilyFibrobacteraceae
GenusFibrobacter
SpeciesFibrobacter succinogenes
StrainS85

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Fibrobacter succinogenes subsp. succinogenes S85
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Fibrobacter succinogenes subsp. succinogenes S85

Accession NumberNC_017448.1

Gene Summary

Adenine Count

1003357 bp

Thymine Count

993117 bp

Guanine Count

917262 bp

Cytosine Count

929268 bp

Genome Length

3843004 bp

Protein-coding Genes

3381844 genes

Non-Coding Genes

461160 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dnaa atpase domain-containing proteinFSU_RS00005P43742+40 - 150354632.1
nad(p)h-binding proteinFSU_RS00010Q5BK63+1505 - 237131141.1
hypothetical proteinFSU_RS00015Not Available+2590 - 395149905.4
nad(+) synthaseFSU_RS00020Q03638+4092 - 556753888.8
peptidylprolyl isomeraseFSU_RS00025P0A9L1+5757 - 636822041.9
hypothetical proteinFSU_RS00030Not Available+6497 - 797250133.9
hypothetical proteinFSU_RS00035Not Available+7989 - 910442231.9
citramalate synthaseFSU_RS00040Q74C76+9163 - 1077058910.4
histidinol dehydrogenaseFSU_RS00045Q5KVC6+10842 - 1213146361.5
cvpa family proteinFSU_RS00050Not Available-12251 - 1298226140.9

Displaying genes 1 – 10 of 3178 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

163 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000098D-cellotrioseC18H32O16Chemical structure of D-cellotrioseNot available
Average504.4371Da
Monoisotopic504.169035Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da

Displaying 1–10 of 163 metabolites