Fibrobacter sp. UWB13

Gram-negativeRod

Kingdom

Pseudomonadati

Phylum

Fibrobacterota

Class

Fibrobacteria

Order

Fibrobacterales

Family

Fibrobacteraceae

Genus

Fibrobacter

Description

Fibrobacter sp. UWB13 is a Gram-negative, rod-shaped bacterium characterized by the presence of flagella, which suggests motility. This organism has a single replicon, indicating a simplified genetic structure that is typical among certain bacterial species. The accession number for Fibrobacter sp. UWB13 is FXAX00000000.1, which serves as a unique identifier for genetic and genomic studies. The traits of Fibrobacter sp. UWB13 position it within the diverse ecosystem of microbial life, particularly in environments where cellulose degradation is crucial. Fibrobacter species are known for their role in breaking down plant materials, which significantly contributes to nutrient cycling in various habitats. The motility facilitated by flagella may enhance the bacterium's ability to colonize and thrive in fluctuating environments, potentially leading to increased efficiency in cellulose degradation. In summary, the combination of its Gram-negative status, rod shape, motility, and single replicon structure underscores the adaptive capabilities of Fibrobacter sp. UWB13. Such traits may play a vital role in its ecological niche, particularly in anaerobic environments where plant biomass decomposition occurs. Understanding these characteristics can provide insight into the ecological roles of similar microorganisms in nutrient cycling and their potential applications in biotechnological processes related to biomass conversion.

Taxonomy

KingdomPseudomonadati
PhylumFibrobacterota
ClassFibrobacteria
OrderFibrobacterales
FamilyFibrobacteraceae
GenusFibrobacter
SpeciesFibrobacter sp. UWB13
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Fibrobacter sp. UWB13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Fibrobacter sp. UWB13 genome assembly, contig: Ga0136277_110,

Gene Summary

Adenine Count

1023895 bp

Thymine Count

957354 bp

Guanine Count

871482 bp

Cytosine Count

951915 bp

Genome Length

3804669 bp

Protein-coding Genes

3084 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna (5-methylaminomethyl-2-thiouridylate)-methyltransferaseSAMN05720489_1618Not AvailableNegative1924874 - 192594139318.8
cell surface protein spraSAMN05720489_1619Not AvailableNegative1925955 - 1933283274769.0
aipr proteinSAMN05720489_1620Not AvailableNegative1933334 - 193522673284.5
leucine rich repeat-containing proteinSAMN05720489_1621Not AvailablePositive1935483 - 193623527747.9
c-terminal peptidase (prc)SAMN05720489_1622Not AvailablePositive1936356 - 193770849621.2
c-terminal peptidase (prc)SAMN05720489_1623Not AvailablePositive1937657 - 193904551589.6
murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domainSAMN05720489_1624Not AvailableNegative1939049 - 194035648068.1
fkbp-type peptidyl-prolyl cis-trans isomerase fkpa/fkbp-type peptidyl-prolyl cis-trans isomerase fklbSAMN05720489_1625Not AvailableNegative1940585 - 194137628768.7
glucosamine--fructose-6-phosphate aminotransferase (isomerizing)SAMN05720489_1626Not AvailablePositive1941505 - 194333465974.9
condensin subunit scpaSAMN05720489_1627Not AvailablePositive1943448 - 194539171817.7

Displaying genes 1611 – 1620 of 2420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.