Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glyceraldehyde 3-phosphate dehydrogenase | SAMN04488524_0899 | Not Available | Positive | 1059229 - 1060230 | 35778.8 |
| hypothetical protein | SAMN04488524_0900 | Not Available | Positive | 1060359 - 1061159 | 29622.7 |
| peptidyl-dipeptidase dcp | SAMN04488524_0901 | Not Available | Positive | 1061206 - 1063350 | 80418.5 |
| hypothetical protein | SAMN04488524_0902 | Not Available | Negative | 1063402 - 1063869 | 15671.5 |
| hypothetical protein | SAMN04488524_0903 | Not Available | Negative | 1063888 - 1064826 | 35118.3 |
| ycei-like domain-containing protein | SAMN04488524_0904 | Not Available | Negative | 1064834 - 1065394 | 20868.7 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04488524_0905 | Not Available | Negative | 1065369 - 1066565 | 43400.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_0906 | Not Available | Negative | 1066562 - 1067095 | 21059.6 |
| tetratricopeptide repeat | SAMN04488524_0907 | Not Available | Negative | 1067257 - 1068006 | 27707.2 |
| rna polymerase sigma factor, sigma-70 family | SAMN04488524_0908 | Not Available | Negative | 1068003 - 1068575 | 21821.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

