Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| probable oxidoreductase, llm family | SAMN04488524_0058 | Not Available | Negative | 74220 - 75260 | 38006.8 |
| atp-dependent clp protease, protease subunit | SAMN04488524_0059 | Not Available | Negative | 75348 - 76028 | 24970.1 |
| hypothetical protein | SAMN04488524_0060 | Not Available | Negative | 76105 - 76374 | 10326.6 |
| dna-directed rna polymerase specialized sigma subunit, sigma24 family | SAMN04488524_0061 | Not Available | Negative | 76355 - 76915 | 21182.2 |
| lysophospholipase l1 | SAMN04488524_0062 | Not Available | Negative | 76975 - 78405 | 53091.0 |
| pectate lyase superfamily protein | SAMN04488524_0063 | Not Available | Negative | 78721 - 80253 | 56955.3 |
| hypothetical protein | SAMN04488524_0064 | Not Available | Positive | 80280 - 80447 | 6366.52 |
| alpha-l-fucosidase | SAMN04488524_0065 | Not Available | Negative | 80664 - 82103 | 53457.9 |
| glycosyl hydrolase family 88 | SAMN04488524_0066 | Not Available | Negative | 82203 - 83387 | 44481.0 |
| alpha-l-fucosidase | SAMN04488524_0067 | Not Available | Negative | 83402 - 85291 | 70676.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

