Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| histidinol-phosphate aminotransferase | SAMN04488524_0819 | Not Available | Positive | 978584 - 979645 | 39468.4 |
| imidazoleglycerol-phosphate dehydratase | SAMN04488524_0820 | Not Available | Positive | 979642 - 980775 | 42628.7 |
| glutamine amidotransferase | SAMN04488524_0821 | Not Available | Positive | 980775 - 981368 | 21780.3 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | SAMN04488524_0822 | Not Available | Positive | 981370 - 982119 | 28134.2 |
| cyclase | SAMN04488524_0823 | Not Available | Positive | 982124 - 982879 | 26913.6 |
| phosphoribosyl-atp pyrophosphatase /phosphoribosyl-amp cyclohydrolase | SAMN04488524_0824 | Not Available | Positive | 982876 - 983466 | 22160.4 |
| wd-40 repeat-containing protein | SAMN04488524_0825 | Not Available | Positive | 983470 - 984369 | 33462.1 |
| tonb-dependent outer membrane receptor, susc/raga subfamily, signature region | SAMN04488524_0826 | Not Available | Negative | 984359 - 990205 | 220643.0 |
| sh3 domain-containing protein | SAMN04488524_0827 | Not Available | Negative | 990243 - 991025 | 29596.3 |
| nucleotide-binding universal stress protein, uspa family | SAMN04488524_0828 | Not Available | Positive | 991133 - 991588 | 16511.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

