Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_0809 | Not Available | Negative | 966852 - 967478 | 24020.9 |
| his kinase a (phospho-acceptor) domain-containing protein | SAMN04488524_0810 | Not Available | Positive | 967504 - 969207 | 63796.2 |
| hypothetical protein | SAMN04488524_0811 | Not Available | Positive | 969265 - 969888 | 23792.0 |
| protein of unknown function | SAMN04488524_0812 | Not Available | Negative | 969939 - 970514 | 20978.3 |
| hypothetical protein | SAMN04488524_0813 | Not Available | Negative | 970529 - 971200 | 25801.2 |
| dihydroorotase | SAMN04488524_0814 | Not Available | Negative | 971193 - 972452 | 44866.2 |
| n-terminal double-transmembrane domain-containing protein | SAMN04488524_0815 | Not Available | Negative | 972449 - 974494 | 76691.6 |
| l,d-transpeptidase catalytic domain | SAMN04488524_0816 | Not Available | Negative | 974515 - 976086 | 60295.6 |
| atp phosphoribosyltransferase | SAMN04488524_0817 | Not Available | Positive | 976390 - 977241 | 30825.6 |
| histidinol dehydrogenase | SAMN04488524_0818 | Not Available | Positive | 977299 - 978597 | 46788.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

