Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1-deoxy-d-xylulose 5-phosphate reductoisomerase | SAMN04488524_0799 | Not Available | Negative | 953413 - 954564 | 41402.2 |
| gh3 auxin-responsive promoter | SAMN04488524_0800 | Not Available | Negative | 954561 - 956093 | 57161.8 |
| hypothetical protein | SAMN04488524_0801 | Not Available | Negative | 956099 - 956884 | 29996.0 |
| glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-n-acetylglucosamine synthase | SAMN04488524_0802 | Not Available | Negative | 956881 - 957849 | 37512.5 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488524_0803 | Not Available | Negative | 957853 - 958806 | 36297.3 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488524_0804 | Not Available | Negative | 958918 - 960165 | 47455.4 |
| susd family protein | SAMN04488524_0805 | Not Available | Negative | 960193 - 961527 | 50331.5 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_0806 | Not Available | Negative | 961539 - 965066 | 132096.0 |
| fecr family protein | SAMN04488524_0807 | Not Available | Negative | 965266 - 966447 | 43469.3 |
| hypothetical protein | SAMN04488524_0808 | Not Available | Positive | 966597 - 966845 | 9850.68 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

