Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heparin lyase | SAMN04488524_0789 | Not Available | Positive | 940224 - 941378 | 43850.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_0790 | Not Available | Positive | 941450 - 942055 | 23417.4 |
| fecr family protein | SAMN04488524_0791 | Not Available | Positive | 942136 - 943320 | 43762.2 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_0792 | Not Available | Positive | 943535 - 947008 | 126516.0 |
| starch-binding associating with outer membrane | SAMN04488524_0793 | Not Available | Positive | 947016 - 948572 | 58233.1 |
| hypothetical protein | SAMN04488524_0794 | Not Available | Positive | 948586 - 950169 | 56314.4 |
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN04488524_0795 | Not Available | Positive | 950194 - 950994 | 29662.8 |
| peptide-methionine (s)-s-oxide reductase | SAMN04488524_0796 | Not Available | Positive | 951026 - 951517 | 18284.3 |
| molecular chaperone hscb | SAMN04488524_0797 | Not Available | Negative | 951509 - 952036 | 20221.2 |
| site-2 protease. metallo peptidase. merops family m50b | SAMN04488524_0798 | Not Available | Negative | 952042 - 953376 | 48841.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

