Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ectoine hydroxylase-related dioxygenase, phytanoyl-coa dioxygenase (phyh) family | SAMN04488524_0748 | Not Available | Negative | 897280 - 898053 | 29289.2 |
| arac-type dna-binding protein | SAMN04488524_0749 | Not Available | Positive | 898185 - 899057 | 33690.6 |
| transcriptional regulator, gntr family | SAMN04488524_0750 | Not Available | Positive | 899123 - 900139 | 38385.7 |
| helix-turn-helix domain-containing protein | SAMN04488524_0751 | Not Available | Negative | 900146 - 900463 | 12113.1 |
| tonb family c-terminal domain-containing protein | SAMN04488524_0752 | Not Available | Positive | 900656 - 901615 | 36229.2 |
| right handed beta helix region | SAMN04488524_0753 | Not Available | Negative | 901629 - 904004 | 88911.0 |
| hypothetical protein | SAMN04488524_0754 | Not Available | Negative | 904189 - 905007 | 30569.7 |
| putative redox protein | SAMN04488524_0755 | Not Available | Positive | 905066 - 905485 | 15176.6 |
| hypothetical protein | SAMN04488524_0756 | Not Available | Negative | 905565 - 906212 | 23468.9 |
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN04488524_0757 | Not Available | Negative | 906436 - 906864 | 15957.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

