Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhamnogalacturonyl hydrolase yesr | SAMN04488524_0738 | Not Available | Negative | 882206 - 883927 | 64691.5 |
| glucosamine-6-phosphate deaminase | SAMN04488524_0739 | Not Available | Negative | 883940 - 884704 | 28592.3 |
| tonb-dependent receptor | SAMN04488524_0740 | Not Available | Negative | 884710 - 887514 | 102338.0 |
| pectic acid lyase | SAMN04488524_0741 | Not Available | Negative | 887581 - 888834 | 47247.8 |
| n-acetyl-beta-hexosaminidase | SAMN04488524_0742 | Not Available | Negative | 888821 - 891325 | 94582.2 |
| polygalacturonase | SAMN04488524_0743 | Not Available | Negative | 891322 - 892875 | 55252.9 |
| glucose/galactose transporter | SAMN04488524_0744 | Not Available | Negative | 892889 - 894181 | 46835.6 |
| n-acetylmuramic acid 6-phosphate etherase | SAMN04488524_0745 | Not Available | Negative | 894185 - 895000 | 29221.7 |
| mfs transporter, acs family, hexuronate transporter | SAMN04488524_0746 | Not Available | Negative | 895036 - 896328 | 47387.7 |
| sugar phosphate isomerase/epimerase | SAMN04488524_0747 | Not Available | Negative | 896325 - 897125 | 30471.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

