Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridinediphosphokinase | SAMN04488524_0708 | Not Available | Negative | 849799 - 850293 | 18832.0 |
| protease-4 | SAMN04488524_0709 | Not Available | Positive | 850324 - 852096 | 65194.5 |
| dna polymerase (family 10) | SAMN04488524_0710 | Not Available | Positive | 852114 - 853790 | 62491.3 |
| protein of unknown function | SAMN04488524_0711 | Not Available | Positive | 853810 - 854418 | 23921.4 |
| adp-heptose:lps heptosyltransferase | SAMN04488524_0712 | Not Available | Positive | 854415 - 855455 | 39053.0 |
| phosphohistidine phosphatase | SAMN04488524_0713 | Not Available | Positive | 855448 - 855951 | 18995.8 |
| amp nucleosidase | SAMN04488524_0714 | Not Available | Negative | 855948 - 856811 | 32028.8 |
| atp-dependent clp protease atp-binding subunit clpx | SAMN04488524_0715 | Not Available | Negative | 856872 - 858113 | 45896.8 |
| atp-dependent clp protease, protease subunit | SAMN04488524_0716 | Not Available | Negative | 858117 - 858809 | 25620.8 |
| trigger factor | SAMN04488524_0717 | Not Available | Negative | 859020 - 860366 | 51244.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

