Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488524_0493 | Not Available | Negative | 659392 - 660552 | 41756.7 |
| outer membrane receptor proteins, mostly fe transport | SAMN04488524_0494 | Not Available | Negative | 660557 - 663142 | 93983.5 |
| dihydrolipoamide dehydrogenase | SAMN04488524_0495 | Not Available | Positive | 663470 - 664858 | 48811.1 |
| glyoxylase, beta-lactamase superfamily ii | SAMN04488524_0496 | Not Available | Positive | 665050 - 665889 | 31864.1 |
| hypothetical protein | SAMN04488524_0497 | Not Available | Positive | 665985 - 666314 | 11838.6 |
| rna polymerase primary sigma factor | SAMN04488524_0498 | Not Available | Positive | 666683 - 667543 | 32680.1 |
| glyceraldehyde 3-phosphate dehydrogenase | SAMN04488524_0499 | Not Available | Positive | 667682 - 669130 | 53308.9 |
| voltage-dependent potassium channel beta subunit, animal | SAMN04488524_0500 | Not Available | Negative | 669206 - 670189 | 36768.4 |
| peptidase family m28 | SAMN04488524_0501 | Not Available | Positive | 670316 - 671275 | 35532.3 |
| hypothetical protein | SAMN04488524_0502 | Not Available | Negative | 671279 - 671545 | 9803.69 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

