Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| colicin import membrane protein | SAMN04488524_0018 | Not Available | Negative | 16202 - 16768 | 20084.3 |
| dna polymerase-4 | SAMN04488524_0019 | Not Available | Negative | 16878 - 17972 | 40795.3 |
| hypothetical protein | SAMN04488524_0020 | Not Available | Negative | 18036 - 18212 | 6371.65 |
| rna polymerase primary sigma factor | SAMN04488524_0021 | Not Available | Negative | 18326 - 19183 | 32266.6 |
| lrp/asnc family transcriptional regulator, leucine-responsive regulatory protein | SAMN04488524_0022 | Not Available | Positive | 19408 - 19896 | 18452.5 |
| starch-binding associating with outer membrane | SAMN04488524_0023 | Not Available | Negative | 19960 - 21552 | 59976.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_0024 | Not Available | Negative | 21563 - 24841 | 121178.0 |
| fecr family protein | SAMN04488524_0025 | Not Available | Negative | 24925 - 26004 | 40231.6 |
| rna polymerase sigma factor, sigma-70 family | SAMN04488524_0026 | Not Available | Negative | 26094 - 26663 | 22115.9 |
| predicted dehydrogenase | SAMN04488524_0027 | Not Available | Negative | 26845 - 27930 | 39330.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

