Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488524_0463 | Not Available | Positive | 623433 - 623762 | 12599.5 |
| cubico group peptidase, beta-lactamase class c family | SAMN04488524_0464 | Not Available | Negative | 623635 - 624630 | 36592.3 |
| predicted nuclease of restriction endonuclease-like (recb) superfamily, duf1016 family | SAMN04488524_0465 | Not Available | Negative | 624674 - 625594 | 36186.0 |
| cubico group peptidase, beta-lactamase class c family | SAMN04488524_0466 | Not Available | Positive | 625820 - 626980 | 44128.0 |
| regulatory protein, luxr family | SAMN04488524_0467 | Not Available | Positive | 627153 - 627608 | 17262.5 |
| protein of unknown function | SAMN04488524_0468 | Not Available | Positive | 627752 - 628261 | 18856.7 |
| glyoxalase superfamily enzyme, possibly 3-demethylubiquinone-9 3-methyltransferase | SAMN04488524_0469 | Not Available | Positive | 628264 - 628662 | 15206.0 |
| hypothetical protein | SAMN04488524_0470 | Not Available | Positive | 628700 - 629107 | 15601.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_0471 | Not Available | Negative | 628915 - 629466 | 21582.3 |
| fad dependent oxidoreductase | SAMN04488524_0472 | Not Available | Negative | 629650 - 631293 | 61138.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

