Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488524_0452 | Not Available | Positive | 613585 - 613704 | 4537.83 |
| cupin domain-containing protein | SAMN04488524_0453 | Not Available | Positive | 613975 - 614310 | 12721.3 |
| hypothetical protein | SAMN04488524_0454 | Not Available | Positive | 614544 - 615998 | 54666.0 |
| protein of unknown function | SAMN04488524_0456 | Not Available | Negative | 616231 - 617379 | 42346.6 |
| fic/doc family protein | SAMN04488524_0457 | Not Available | Positive | 617745 - 618719 | 36938.1 |
| dna-binding transcriptional regulator, merr family | SAMN04488524_0458 | Not Available | Negative | 618877 - 619656 | 29864.2 |
| hypothetical protein | SAMN04488524_0459 | Not Available | Positive | 619858 - 620223 | 14082.2 |
| polyhydroxybutyrate depolymerase | SAMN04488524_0460 | Not Available | Positive | 620225 - 621148 | 33749.8 |
| histidine kinase | SAMN04488524_0461 | Not Available | Positive | 621191 - 622249 | 40853.4 |
| two component transcriptional regulator, lyttr family | SAMN04488524_0462 | Not Available | Positive | 622251 - 623018 | 29270.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

