Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolases family 28 | SAMN04488524_4803 | Not Available | Positive | 5690038 - 5691456 | 52259.1 |
| transcriptional regulator, laci family | SAMN04488524_4804 | Not Available | Negative | 5691439 - 5692452 | 37682.2 |
| pectate lyase superfamily protein | SAMN04488524_4805 | Not Available | Positive | 5692620 - 5694296 | 61118.6 |
| pectate lyase, pela/pel-15e family | SAMN04488524_4806 | Not Available | Positive | 5694317 - 5695348 | 38647.3 |
| tagaturonate reductase | SAMN04488524_4807 | Not Available | Positive | 5695460 - 5696977 | 56470.8 |
| altronate hydrolase | SAMN04488524_4808 | Not Available | Positive | 5696974 - 5698626 | 59297.6 |
| d-glucuronate isomerase | SAMN04488524_4809 | Not Available | Positive | 5698678 - 5700078 | 53991.0 |
| conserved repeat domain-containing protein | SAMN04488524_4810 | Not Available | Negative | 5700606 - 5705987 | 178873.0 |
| 3-dehydro-l-gulonate 2-dehydrogenase | SAMN04488524_4811 | Not Available | Positive | 5706141 - 5707127 | 35755.3 |
| hypothetical protein | SAMN04488524_4812 | Not Available | Negative | 5707134 - 5707427 | 10692.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

