Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_0442 | Not Available | Positive | 596653 - 597261 | 23233.4 |
| fecr family protein | SAMN04488524_0443 | Not Available | Positive | 597324 - 598529 | 45826.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_0444 | Not Available | Positive | 598661 - 602305 | 133968.0 |
| susd family protein | SAMN04488524_0445 | Not Available | Positive | 602310 - 603719 | 52975.4 |
| peroxiredoxin | SAMN04488524_0446 | Not Available | Negative | 603803 - 604921 | 41788.1 |
| susd family protein | SAMN04488524_0447 | Not Available | Negative | 604948 - 606483 | 58365.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_0448 | Not Available | Negative | 606495 - 610079 | 133396.0 |
| fecr family protein | SAMN04488524_0449 | Not Available | Negative | 610229 - 611404 | 43653.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_0450 | Not Available | Negative | 611649 - 612239 | 23079.6 |
| conserved hypothetical protein (putative transposase or invertase) | SAMN04488524_0451 | Not Available | Positive | 612677 - 613585 | 35564.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

