Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tat (twin-arginine translocation) pathway signal sequence | SAMN04488524_4728 | Not Available | Positive | 5596521 - 5597444 | 33956.7 |
| two component transcriptional regulator, lyttr family | SAMN04488524_4729 | Not Available | Negative | 5597459 - 5598229 | 29984.3 |
| hypothetical protein | SAMN04488524_4730 | Not Available | Positive | 5598408 - 5598749 | 12820.9 |
| hypothetical protein | SAMN04488524_4732 | Not Available | Negative | 5599251 - 5599706 | 17206.6 |
| hypothetical protein | SAMN04488524_4733 | Not Available | Negative | 5599700 - 5600062 | 13857.8 |
| hypothetical protein | SAMN04488524_4734 | Not Available | Negative | 5600283 - 5600927 | 23166.0 |
| iron complex outermembrane recepter protein | SAMN04488524_4735 | Not Available | Positive | 5601163 - 5603601 | 90497.8 |
| uncharacterized iron-regulated membrane protein | SAMN04488524_4736 | Not Available | Positive | 5603612 - 5604949 | 49862.7 |
| hypothetical protein | SAMN04488524_4737 | Not Available | Positive | 5604946 - 5605179 | 8255.79 |
| protein of unknown function | SAMN04488524_4740 | Not Available | Negative | 5605911 - 5606462 | 21158.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

