Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipopolysaccharide export system permease protein | SAMN04488524_4716 | Not Available | Negative | 5581844 - 5583286 | 53771.6 |
| hypothetical protein | SAMN04488524_4717 | Not Available | Negative | 5583317 - 5583697 | 14950.5 |
| Trna-met | Not Available | Not Available | Positive | 5583802 - 5583875 | Not Available |
| subtilase family protein | SAMN04488524_4719 | Not Available | Negative | 5583917 - 5585683 | 65948.2 |
| conserved repeat domain-containing protein/gliding motility-associated c-terminal domain-containing protein | SAMN04488524_4722 | Not Available | Positive | 5586264 - 5590637 | 145224.0 |
| type ix secretion system membrane protein, porp/sprf family | SAMN04488524_4723 | Not Available | Positive | 5590647 - 5591651 | 37194.4 |
| outer membrane protein ompa | SAMN04488524_4724 | Not Available | Positive | 5591663 - 5593399 | 64900.8 |
| cubico group peptidase, beta-lactamase class c family | SAMN04488524_4725 | Not Available | Negative | 5593418 - 5594512 | 40766.2 |
| glucokinase | SAMN04488524_4726 | Not Available | Positive | 5594669 - 5595538 | 31435.7 |
| s-formylglutathione hydrolase frmb | SAMN04488524_4727 | Not Available | Positive | 5595551 - 5596366 | 30978.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

