Pedobacter africanus strain DSM 12126

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter africanus strain DSM 12126 is a bacterium characterized by the presence of flagella, which suggests it has the capability for motility. This trait may facilitate its movement in various environments, potentially aiding in colonization and interaction with other microorganisms. The strain is noted to possess a single replicon, which indicates a streamlined genetic organization. This can be an advantage for efficient replication and stability of genetic material, allowing for rapid adaptation to environmental changes. Pedobacter africanus is documented under the accession FWXT00000000.1, providing a reference for genomic studies and comparative analyses with other strains or species within the genus Pedobacter. The ecological role of Pedobacter africanus, like other members of the genus, is likely linked to its involvement in the degradation of organic matter and nutrient cycling in soil and aquatic environments. The presence of flagella may enhance its ecological interactions, facilitating its ability to thrive in diverse habitats. Overall, the traits of Pedobacter africanus strain DSM 12126 underscore its potential significance in microbiological studies and ecological research, particularly in understanding microbial dynamics in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter africanus
Strainstrain DSM 12126

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter africanus strain DSM 12126 genome assembly, contig:

Gene Summary

Adenine Count

1609729 bp

Thymine Count

1628936 bp

Guanine Count

1235949 bp

Cytosine Count

1248253 bp

Genome Length

5722867 bp

Protein-coding Genes

4691 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipopolysaccharide export system permease proteinSAMN04488524_4716Not AvailableNegative5581844 - 558328653771.6
hypothetical proteinSAMN04488524_4717Not AvailableNegative5583317 - 558369714950.5
Trna-metNot AvailableNot AvailablePositive5583802 - 5583875Not Available
subtilase family proteinSAMN04488524_4719Not AvailableNegative5583917 - 558568365948.2
conserved repeat domain-containing protein/gliding motility-associated c-terminal domain-containing proteinSAMN04488524_4722Not AvailablePositive5586264 - 5590637145224.0
type ix secretion system membrane protein, porp/sprf familySAMN04488524_4723Not AvailablePositive5590647 - 559165137194.4
outer membrane protein ompaSAMN04488524_4724Not AvailablePositive5591663 - 559339964900.8
cubico group peptidase, beta-lactamase class c familySAMN04488524_4725Not AvailableNegative5593418 - 559451240766.2
glucokinaseSAMN04488524_4726Not AvailablePositive5594669 - 559553831435.7
s-formylglutathione hydrolase frmbSAMN04488524_4727Not AvailablePositive5595551 - 559636630978.9

Displaying genes 4661 – 4670 of 4757 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.