Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lyse type translocator | SAMN04488524_4706 | Not Available | Negative | 5568165 - 5568818 | 24824.0 |
| excinuclease abc subunit a | SAMN04488524_4707 | Not Available | Negative | 5568826 - 5571636 | 104757.0 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_4708 | Not Available | Positive | 5571901 - 5572476 | 22575.4 |
| hypothetical protein | SAMN04488524_4709 | Not Available | Positive | 5572610 - 5572807 | 7486.73 |
| dna-(apurinic or apyrimidinic site) lyase /endonuclease iii | SAMN04488524_4710 | Not Available | Positive | 5572871 - 5573533 | 24988.4 |
| recombination protein reca | SAMN04488524_4711 | Not Available | Positive | 5573666 - 5574679 | 36179.7 |
| hypothetical protein | SAMN04488524_4712 | Not Available | Negative | 5574726 - 5574950 | 8430.8 |
| n6-l-threonylcarbamoyladenine synthase | SAMN04488524_4713 | Not Available | Negative | 5574967 - 5575968 | 36247.9 |
| family of unknown function | SAMN04488524_4714 | Not Available | Positive | 5575996 - 5580483 | 167095.0 |
| 3,4-dihydroxy-2-butanone 4-phosphate synthase | SAMN04488524_4715 | Not Available | Negative | 5580488 - 5581747 | 46191.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

