Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase-3 subunit gamma/tau | SAMN04488524_4696 | Not Available | Positive | 5556615 - 5558465 | 69020.7 |
| hypothetical protein | SAMN04488524_4697 | Not Available | Negative | 5558462 - 5558881 | 15695.5 |
| isocitrate dehydrogenase | SAMN04488524_4698 | Not Available | Negative | 5558990 - 5561209 | 79566.9 |
| cell division transport system permease protein | SAMN04488524_4699 | Not Available | Positive | 5561422 - 5562300 | 32361.5 |
| protein of unknown function | SAMN04488524_4700 | Not Available | Positive | 5562300 - 5562524 | 8214.45 |
| undecaprenyl-diphosphatase | SAMN04488524_4701 | Not Available | Positive | 5562534 - 5563328 | 29241.9 |
| trna pseudouridine synthase b | SAMN04488524_4702 | Not Available | Positive | 5563328 - 5564056 | 27080.5 |
| uncharacterized membrane-anchored protein yitt, contains duf161 and duf2179 domains | SAMN04488524_4703 | Not Available | Positive | 5564056 - 5564919 | 31012.9 |
| riboflavin kinase / fmn adenylyltransferase | SAMN04488524_4704 | Not Available | Positive | 5564922 - 5565854 | 35151.6 |
| transporter, cpa2 family | SAMN04488524_4705 | Not Available | Positive | 5565930 - 5568155 | 81774.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

