Pedobacter africanus strain DSM 12126

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter africanus strain DSM 12126 is a bacterium characterized by the presence of flagella, which suggests it has the capability for motility. This trait may facilitate its movement in various environments, potentially aiding in colonization and interaction with other microorganisms. The strain is noted to possess a single replicon, which indicates a streamlined genetic organization. This can be an advantage for efficient replication and stability of genetic material, allowing for rapid adaptation to environmental changes. Pedobacter africanus is documented under the accession FWXT00000000.1, providing a reference for genomic studies and comparative analyses with other strains or species within the genus Pedobacter. The ecological role of Pedobacter africanus, like other members of the genus, is likely linked to its involvement in the degradation of organic matter and nutrient cycling in soil and aquatic environments. The presence of flagella may enhance its ecological interactions, facilitating its ability to thrive in diverse habitats. Overall, the traits of Pedobacter africanus strain DSM 12126 underscore its potential significance in microbiological studies and ecological research, particularly in understanding microbial dynamics in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter africanus
Strainstrain DSM 12126

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter africanus strain DSM 12126 genome assembly, contig:

Gene Summary

Adenine Count

1609729 bp

Thymine Count

1628936 bp

Guanine Count

1235949 bp

Cytosine Count

1248253 bp

Genome Length

5722867 bp

Protein-coding Genes

4691 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphoribosyl 1,2-cyclic phosphodiesteraseSAMN04488524_4686Not AvailablePositive5549990 - 555078729687.4
hypothetical proteinSAMN04488524_4687Not AvailableNegative5550753 - 555123218564.5
hypothetical proteinSAMN04488524_4688Not AvailablePositive5551283 - 555176218289.8
beta-aspartyl-peptidase (threonine type)SAMN04488524_4689Not AvailableNegative5551781 - 555281536662.4
monofunctional biosynthetic peptidoglycan transglycosylaseSAMN04488524_4690Not AvailableNegative5552874 - 555353925546.5
lsu ribosomal protein l9pSAMN04488524_4691Not AvailableNegative5553681 - 555412416247.8
small subunit ribosomal protein s18SAMN04488524_4692Not AvailableNegative5554135 - 555439810212.6
ssu ribosomal protein s6pSAMN04488524_4693Not AvailableNegative5554398 - 555476013738.6
por secretion system c-terminal sorting domain-containing proteinSAMN04488524_4694Not AvailableNegative5554962 - 555555522391.9
transcriptional regulator, arac familySAMN04488524_4695Not AvailablePositive5555710 - 555657332851.1

Displaying genes 4631 – 4640 of 4757 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.