Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosyl 1,2-cyclic phosphodiesterase | SAMN04488524_4686 | Not Available | Positive | 5549990 - 5550787 | 29687.4 |
| hypothetical protein | SAMN04488524_4687 | Not Available | Negative | 5550753 - 5551232 | 18564.5 |
| hypothetical protein | SAMN04488524_4688 | Not Available | Positive | 5551283 - 5551762 | 18289.8 |
| beta-aspartyl-peptidase (threonine type) | SAMN04488524_4689 | Not Available | Negative | 5551781 - 5552815 | 36662.4 |
| monofunctional biosynthetic peptidoglycan transglycosylase | SAMN04488524_4690 | Not Available | Negative | 5552874 - 5553539 | 25546.5 |
| lsu ribosomal protein l9p | SAMN04488524_4691 | Not Available | Negative | 5553681 - 5554124 | 16247.8 |
| small subunit ribosomal protein s18 | SAMN04488524_4692 | Not Available | Negative | 5554135 - 5554398 | 10212.6 |
| ssu ribosomal protein s6p | SAMN04488524_4693 | Not Available | Negative | 5554398 - 5554760 | 13738.6 |
| por secretion system c-terminal sorting domain-containing protein | SAMN04488524_4694 | Not Available | Negative | 5554962 - 5555555 | 22391.9 |
| transcriptional regulator, arac family | SAMN04488524_4695 | Not Available | Positive | 5555710 - 5556573 | 32851.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

