Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_4676 | Not Available | Negative | 5537402 - 5540641 | 118712.0 |
| lysophospholipase l1 | SAMN04488524_4677 | Not Available | Positive | 5540740 - 5541627 | 32853.0 |
| nucleotide-binding universal stress protein, uspa family | SAMN04488524_4678 | Not Available | Negative | 5541631 - 5542707 | 40132.5 |
| protein of unknown function | SAMN04488524_4679 | Not Available | Positive | 5542868 - 5543569 | 26907.4 |
| tryptophan 2,3-dioxygenase apoenzyme | SAMN04488524_4680 | Not Available | Negative | 5543632 - 5544591 | 37369.9 |
| kynureninase | SAMN04488524_4681 | Not Available | Negative | 5544625 - 5545911 | 48301.9 |
| Trna-phe | Not Available | Not Available | Positive | 5546205 - 5546277 | Not Available |
| right handed beta helix region | SAMN04488524_4683 | Not Available | Negative | 5546476 - 5547705 | 43611.3 |
| 4fe-4s dicluster domain-containing protein | SAMN04488524_4684 | Not Available | Positive | 5547893 - 5549170 | 47666.3 |
| cysteine-rich domain-containing protein | SAMN04488524_4685 | Not Available | Positive | 5549200 - 5550000 | 29463.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

