Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spermidine synthase | SAMN04488524_4645 | Not Available | Negative | 5493239 - 5494753 | 56957.0 |
| protein of unknown function | SAMN04488524_4646 | Not Available | Negative | 5494756 - 5494980 | 8134.28 |
| protein of unknown function | SAMN04488524_4647 | Not Available | Negative | 5495166 - 5496470 | 49604.4 |
| s-adenosylmethionine decarboxylase | SAMN04488524_4648 | Not Available | Negative | 5496473 - 5496826 | 13493.0 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488524_4650 | Not Available | Positive | 5497963 - 5498526 | 21039.0 |
| glycosyl hydrolase family 88 | SAMN04488524_4651 | Not Available | Negative | 5498732 - 5500003 | 48505.7 |
| hypothetical protein | SAMN04488524_4652 | Not Available | Negative | 5500036 - 5502309 | 85532.1 |
| alpha-l-fucosidase | SAMN04488524_4653 | Not Available | Negative | 5502306 - 5503709 | 52766.4 |
| protein of unknown function | SAMN04488524_4654 | Not Available | Negative | 5503725 - 5504759 | 36123.3 |
| starch-binding associating with outer membrane | SAMN04488524_4655 | Not Available | Negative | 5504779 - 5506779 | 72089.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

