Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phospholipid/cholesterol/gamma-hch transport system permease protein | SAMN04488524_4635 | Not Available | Positive | 5480949 - 5481764 | 29367.3 |
| phospholipid/cholesterol/gamma-hch transport system atp-binding protein | SAMN04488524_4636 | Not Available | Positive | 5481769 - 5482539 | 28840.1 |
| phospholipid/cholesterol/gamma-hch transport system substrate-binding protein | SAMN04488524_4637 | Not Available | Positive | 5482545 - 5483534 | 35712.0 |
| beta-glucosidase | SAMN04488524_4638 | Not Available | Negative | 5483628 - 5486039 | 89381.8 |
| transcriptional regulator, arac family | SAMN04488524_4639 | Not Available | Positive | 5486177 - 5486998 | 31560.7 |
| hypothetical protein | SAMN04488524_4640 | Not Available | Positive | 5487059 - 5487532 | 17693.2 |
| wd40-like beta propeller repeat | SAMN04488524_4641 | Not Available | Negative | 5487518 - 5488798 | 46848.9 |
| l-fucose isomerase | SAMN04488524_4642 | Not Available | Negative | 5488807 - 5490441 | 60949.7 |
| hypothetical protein | SAMN04488524_4643 | Not Available | Negative | 5490530 - 5491603 | 42147.1 |
| protoporphyrinogen oxidase | SAMN04488524_4644 | Not Available | Negative | 5491600 - 5493237 | 61114.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

