Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oligoendopeptidase f | SAMN04488524_4504 | Not Available | Positive | 5331212 - 5332927 | 66296.0 |
| amino acid/polyamine/organocation transporter, apc superfamily | SAMN04488524_4505 | Not Available | Positive | 5332984 - 5334933 | 71566.5 |
| hypothetical protein | SAMN04488524_4506 | Not Available | Positive | 5335175 - 5336104 | 35112.9 |
| protein of unknown function | SAMN04488524_4507 | Not Available | Negative | 5336124 - 5336597 | 17542.1 |
| protein of unknown function | SAMN04488524_4508 | Not Available | Negative | 5336608 - 5337525 | 34370.2 |
| iron complex outermembrane recepter protein | SAMN04488524_4509 | Not Available | Negative | 5337575 - 5339794 | 83768.0 |
| kup system potassium uptake protein | SAMN04488524_4510 | Not Available | Negative | 5340291 - 5342249 | 72941.3 |
| por secretion system c-terminal sorting domain-containing protein | SAMN04488524_4511 | Not Available | Positive | 5342514 - 5343029 | 19132.6 |
| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) | SAMN04488524_4512 | Not Available | Positive | 5343130 - 5343741 | 23118.8 |
| peptidase family m23 | SAMN04488524_4513 | Not Available | Positive | 5343748 - 5345472 | 64032.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

