Pedobacter africanus strain DSM 12126

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter africanus strain DSM 12126 is a bacterium characterized by the presence of flagella, which suggests it has the capability for motility. This trait may facilitate its movement in various environments, potentially aiding in colonization and interaction with other microorganisms. The strain is noted to possess a single replicon, which indicates a streamlined genetic organization. This can be an advantage for efficient replication and stability of genetic material, allowing for rapid adaptation to environmental changes. Pedobacter africanus is documented under the accession FWXT00000000.1, providing a reference for genomic studies and comparative analyses with other strains or species within the genus Pedobacter. The ecological role of Pedobacter africanus, like other members of the genus, is likely linked to its involvement in the degradation of organic matter and nutrient cycling in soil and aquatic environments. The presence of flagella may enhance its ecological interactions, facilitating its ability to thrive in diverse habitats. Overall, the traits of Pedobacter africanus strain DSM 12126 underscore its potential significance in microbiological studies and ecological research, particularly in understanding microbial dynamics in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter africanus
Strainstrain DSM 12126

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter africanus strain DSM 12126 genome assembly, contig:

Gene Summary

Adenine Count

1609729 bp

Thymine Count

1628936 bp

Guanine Count

1235949 bp

Cytosine Count

1248253 bp

Genome Length

5722867 bp

Protein-coding Genes

4691 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gmp synthase (glutamine-hydrolysing)SAMN04488524_4484Not AvailableNegative5311428 - 531295456006.3
dcmp deaminaseSAMN04488524_4485Not AvailableNegative5312963 - 531341816361.5
threonine/homoserine/homoserine lactone efflux proteinSAMN04488524_4486Not AvailablePositive5313558 - 531418423656.9
serine protease doSAMN04488524_4487Not AvailablePositive5314286 - 531601663099.4
amidophosphoribosyltransferaseSAMN04488524_4488Not AvailableNegative5316078 - 531797971915.0
glutamate racemaseSAMN04488524_4489Not AvailableNegative5318127 - 531899632149.8
periplasmic chaperone for outer membrane proteins skpSAMN04488524_4490Not AvailableNegative5319015 - 531957220260.4
periplasmic chaperone for outer membrane proteins skpSAMN04488524_4491Not AvailableNegative5319615 - 532014520383.7
beta-barrel assembly machine subunit bamaSAMN04488524_4492Not AvailableNegative5320257 - 532277393871.2
undecaprenyl diphosphate synthaseSAMN04488524_4493Not AvailableNegative5322887 - 532362728339.9

Displaying genes 4431 – 4440 of 4757 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.