Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gmp synthase (glutamine-hydrolysing) | SAMN04488524_4484 | Not Available | Negative | 5311428 - 5312954 | 56006.3 |
| dcmp deaminase | SAMN04488524_4485 | Not Available | Negative | 5312963 - 5313418 | 16361.5 |
| threonine/homoserine/homoserine lactone efflux protein | SAMN04488524_4486 | Not Available | Positive | 5313558 - 5314184 | 23656.9 |
| serine protease do | SAMN04488524_4487 | Not Available | Positive | 5314286 - 5316016 | 63099.4 |
| amidophosphoribosyltransferase | SAMN04488524_4488 | Not Available | Negative | 5316078 - 5317979 | 71915.0 |
| glutamate racemase | SAMN04488524_4489 | Not Available | Negative | 5318127 - 5318996 | 32149.8 |
| periplasmic chaperone for outer membrane proteins skp | SAMN04488524_4490 | Not Available | Negative | 5319015 - 5319572 | 20260.4 |
| periplasmic chaperone for outer membrane proteins skp | SAMN04488524_4491 | Not Available | Negative | 5319615 - 5320145 | 20383.7 |
| beta-barrel assembly machine subunit bama | SAMN04488524_4492 | Not Available | Negative | 5320257 - 5322773 | 93871.2 |
| undecaprenyl diphosphate synthase | SAMN04488524_4493 | Not Available | Negative | 5322887 - 5323627 | 28339.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

