Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| manganese transport protein | SAMN04488524_4384 | Not Available | Negative | 5197275 - 5199152 | 68832.4 |
| iron (metal) dependent repressor, dtxr family | SAMN04488524_4385 | Not Available | Negative | 5199155 - 5199838 | 25913.4 |
| lrp/asnc family transcriptional regulator, leucine-responsive regulatory protein | SAMN04488524_4386 | Not Available | Positive | 5199948 - 5200418 | 17942.1 |
| uracil-dna glycosylase | SAMN04488524_4387 | Not Available | Negative | 5200468 - 5201145 | 24960.9 |
| hypothetical protein | SAMN04488524_4388 | Not Available | Positive | 5201297 - 5201836 | 20759.0 |
| hypothetical protein | SAMN04488524_4389 | Not Available | Negative | 5201865 - 5202080 | 8361.77 |
| lysyl-trna synthetase, class ii | SAMN04488524_4390 | Not Available | Negative | 5202167 - 5203888 | 65568.1 |
| long-chain acyl-coa synthetase | SAMN04488524_4391 | Not Available | Negative | 5203963 - 5205876 | 71489.6 |
| iron-sulfur cluster assembly protein | SAMN04488524_4392 | Not Available | Negative | 5205955 - 5206281 | 11864.8 |
| nitrogen fixation protein nifu | SAMN04488524_4393 | Not Available | Negative | 5206349 - 5206762 | 14811.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

