Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| heparinase ii/iii-like protein | SAMN04488524_4303 | Not Available | Negative | 5108215 - 5110083 | 70163.8 |
| polyketide cyclase / dehydrase and lipid transport | SAMN04488524_4304 | Not Available | Negative | 5110166 - 5110564 | 14705.6 |
| orotate phosphoribosyltransferase | SAMN04488524_4305 | Not Available | Negative | 5110571 - 5111230 | 24239.9 |
| rna polymerase primary sigma factor | SAMN04488524_4306 | Not Available | Positive | 5111590 - 5112453 | 32968.3 |
| adp-ribose pyrophosphatase yjhb, nudix family | SAMN04488524_4307 | Not Available | Positive | 5112560 - 5113186 | 23708.8 |
| phosphopantetheine adenylyltransferase | SAMN04488524_4308 | Not Available | Negative | 5113181 - 5113642 | 17037.9 |
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | SAMN04488524_4309 | Not Available | Negative | 5113655 - 5114194 | 20178.4 |
| protein of unknown function | SAMN04488524_4310 | Not Available | Negative | 5114185 - 5115015 | 31417.8 |
| exodeoxyribonuclease-5 | SAMN04488524_4311 | Not Available | Positive | 5115068 - 5116510 | 54356.6 |
| four helix bundle sensory module for signal transduction | SAMN04488524_4312 | Not Available | Positive | 5116560 - 5117216 | 24371.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

