Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcription elongation factor, grea/greb, c-term | SAMN04488524_4293 | Not Available | Positive | 5093838 - 5094284 | 16117.1 |
| polysaccharide deacetylase | SAMN04488524_4294 | Not Available | Negative | 5094286 - 5095146 | 32284.7 |
| polysaccharide deacetylase | SAMN04488524_4295 | Not Available | Negative | 5095173 - 5096072 | 33594.3 |
| dipeptidyl aminopeptidase/acylaminoacyl peptidase | SAMN04488524_4296 | Not Available | Positive | 5096202 - 5098715 | 95995.6 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04488524_4297 | Not Available | Negative | 5098793 - 5099398 | 21290.5 |
| predicted glycosyl hydrolase, gh43/duf377 family | SAMN04488524_4298 | Not Available | Positive | 5099779 - 5101266 | 56646.1 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488524_4299 | Not Available | Negative | 5101269 - 5103554 | 86899.7 |
| atp-dependent clp protease atp-binding subunit clpb | SAMN04488524_4300 | Not Available | Negative | 5103710 - 5106304 | 97249.5 |
| protein of unknown function (du1801) | SAMN04488524_4301 | Not Available | Positive | 5106658 - 5107002 | 13792.3 |
| predicted arabinose efflux permease, mfs family | SAMN04488524_4302 | Not Available | Positive | 5107009 - 5108220 | 44582.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

