Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pimeloyl-acp methyl ester carboxylesterase | SAMN04488524_4192 | Not Available | Negative | 4976539 - 4977321 | 28558.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_4193 | Not Available | Positive | 4977545 - 4980802 | 121189.0 |
| starch-binding associating with outer membrane | SAMN04488524_4194 | Not Available | Positive | 4980814 - 4982742 | 73424.8 |
| rhamnogalacturonyl hydrolase yesr | SAMN04488524_4195 | Not Available | Positive | 4982769 - 4983875 | 42359.9 |
| glycosyl hydrolases family 43 | SAMN04488524_4196 | Not Available | Positive | 4983913 - 4984857 | 35720.3 |
| dna-binding transcriptional regulator, lrp family | SAMN04488524_4197 | Not Available | Negative | 4984910 - 4985377 | 17629.4 |
| rna polymerase primary sigma factor | SAMN04488524_4198 | Not Available | Positive | 4985557 - 4986417 | 32532.8 |
| 2og-fe(ii) oxygenase superfamily protein | SAMN04488524_4199 | Not Available | Positive | 4986431 - 4986961 | 20720.9 |
| transcriptional regulator, tetr family | SAMN04488524_4200 | Not Available | Positive | 4987059 - 4987661 | 22866.6 |
| putative oxidoreductase | SAMN04488524_4201 | Not Available | Positive | 4987707 - 4988138 | 15869.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

