Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator, lysr family | SAMN04488524_4162 | Not Available | Negative | 4937412 - 4938299 | 34071.5 |
| histidine ammonia-lyase | SAMN04488524_4163 | Not Available | Positive | 4938376 - 4939950 | 56194.9 |
| urocanate hydratase | SAMN04488524_4164 | Not Available | Positive | 4939954 - 4941954 | 74126.1 |
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN04488524_4165 | Not Available | Negative | 4941957 - 4942484 | 19756.6 |
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN04488524_4166 | Not Available | Negative | 4942512 - 4942976 | 17324.7 |
| transcriptional regulator, arsr family | SAMN04488524_4167 | Not Available | Negative | 4942996 - 4943310 | 11975.4 |
| glycerophosphoryl diester phosphodiesterase | SAMN04488524_4168 | Not Available | Negative | 4943407 - 4944282 | 33511.8 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_4169 | Not Available | Positive | 4944511 - 4945086 | 22514.3 |
| fecr family protein | SAMN04488524_4170 | Not Available | Positive | 4945205 - 4946305 | 40324.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_4171 | Not Available | Positive | 4946504 - 4950025 | 131697.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

