Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_4100 | Not Available | Positive | 4856869 - 4857423 | 21804.5 |
| fecr family protein | SAMN04488524_4101 | Not Available | Positive | 4857477 - 4858652 | 44688.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_4102 | Not Available | Positive | 4858729 - 4862136 | 126286.0 |
| susd family protein | SAMN04488524_4103 | Not Available | Positive | 4862150 - 4863580 | 53758.8 |
| protein of unknown function | SAMN04488524_4104 | Not Available | Positive | 4863584 - 4864348 | 27846.4 |
| thioredoxin-like | SAMN04488524_4105 | Not Available | Positive | 4864361 - 4865518 | 45022.7 |
| hypothetical protein | SAMN04488524_4106 | Not Available | Negative | 4865589 - 4865765 | 6531.02 |
| Trna-cys | Not Available | Not Available | Positive | 4865794 - 4865867 | Not Available |
| rna methyltransferase, trmh family | SAMN04488524_4108 | Not Available | Negative | 4865922 - 4866701 | 28865.0 |
| outer membrane protein assembly factor bama | SAMN04488524_4109 | Not Available | Positive | 4866689 - 4869046 | 89433.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

