Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized membrane protein yckc, rdd family | SAMN04488524_4090 | Not Available | Negative | 4844855 - 4845469 | 22172.4 |
| hypothetical protein | SAMN04488524_4091 | Not Available | Positive | 4845573 - 4846136 | 21211.8 |
| transporter, cpa2 family | SAMN04488524_4092 | Not Available | Positive | 4846156 - 4848321 | 79216.2 |
| predicted rna-binding protein, contains pua-like domain | SAMN04488524_4093 | Not Available | Positive | 4848393 - 4848800 | 15694.7 |
| acyl-coa hydrolase | SAMN04488524_4094 | Not Available | Negative | 4848980 - 4849501 | 19298.3 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04488524_4095 | Not Available | Negative | 4849557 - 4850936 | 51036.2 |
| alpha-amylase | SAMN04488524_4096 | Not Available | Positive | 4851036 - 4852520 | 56585.8 |
| protein of unknown function | SAMN04488524_4097 | Not Available | Negative | 4852509 - 4853777 | 48944.8 |
| atp-binding cassette, subfamily f, member 3 | SAMN04488524_4098 | Not Available | Negative | 4853774 - 4855690 | 72253.0 |
| dihydroorotate oxidase a | SAMN04488524_4099 | Not Available | Positive | 4855759 - 4856793 | 38321.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

