Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | SAMN04488524_4080 | Not Available | Positive | 4831248 - 4832363 | 42553.8 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488524_4081 | Not Available | Positive | 4832365 - 4832928 | 21423.0 |
| valyl-trna synthetase | SAMN04488524_4082 | Not Available | Positive | 4833202 - 4835865 | 101746.0 |
| transcriptional regulator | SAMN04488524_4083 | Not Available | Negative | 4836010 - 4836630 | 23255.1 |
| membrane fusion protein, multidrug efflux system | SAMN04488524_4084 | Not Available | Positive | 4836886 - 4838028 | 40479.6 |
| hydrophobic/amphiphilic exporter-1, hae1 family | SAMN04488524_4085 | Not Available | Positive | 4838055 - 4841189 | 112994.0 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN04488524_4086 | Not Available | Positive | 4841207 - 4842589 | 50393.4 |
| type i restriction enzyme r protein n terminus (hsdr_n) | SAMN04488524_4087 | Not Available | Negative | 4842923 - 4843384 | 17875.9 |
| dna polymerase iii, delta subunit | SAMN04488524_4088 | Not Available | Positive | 4843430 - 4844455 | 39007.3 |
| hypothetical protein | SAMN04488524_4089 | Not Available | Negative | 4844465 - 4844845 | 14022.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

