Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutathione peroxidase | SAMN04488524_4050 | Not Available | Positive | 4797716 - 4798192 | 18187.0 |
| bacillithiol biosynthesis deacetylase bshb1 | SAMN04488524_4051 | Not Available | Positive | 4798212 - 4798928 | 26564.0 |
| glutaryl-coa dehydrogenase | SAMN04488524_4052 | Not Available | Positive | 4798996 - 4800357 | 50391.1 |
| l-lysine 6-transaminase precursor | SAMN04488524_4053 | Not Available | Negative | 4800361 - 4801692 | 49967.8 |
| pas domain s-box-containing protein | SAMN04488524_4054 | Not Available | Negative | 4801890 - 4803428 | 57150.9 |
| 1-aminocyclopropane-1-carboxylate deaminase | SAMN04488524_4055 | Not Available | Negative | 4803536 - 4804414 | 32123.8 |
| 23s rrna pseudouridine1911/1915/1917 synthase | SAMN04488524_4056 | Not Available | Positive | 4804774 - 4805805 | 39254.7 |
| branched-chain amino acid aminotransferase | SAMN04488524_4057 | Not Available | Positive | 4805821 - 4806657 | 31742.5 |
| methionyl-trna formyltransferase | SAMN04488524_4058 | Not Available | Negative | 4806662 - 4807570 | 33377.6 |
| dna topoisomerase-1 | SAMN04488524_4059 | Not Available | Positive | 4807631 - 4808665 | 38890.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

