Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylformylglycinamidine synthase | SAMN04488524_0371 | Not Available | Positive | 504587 - 508249 | 134064.0 |
| signal transducer regulating beta-lactamase production, contains metallopeptidase domain | SAMN04488524_0372 | Not Available | Negative | 508262 - 509581 | 49616.3 |
| predicted transcriptional regulator | SAMN04488524_0373 | Not Available | Negative | 509589 - 509960 | 14027.9 |
| carboxypepd_reg-like domain-containing protein | SAMN04488524_0374 | Not Available | Negative | 510002 - 512689 | 100538.0 |
| glpgli family protein | SAMN04488524_0375 | Not Available | Negative | 512686 - 513606 | 33889.8 |
| numod1 domain-containing protein | SAMN04488524_0376 | Not Available | Negative | 513742 - 515013 | 48048.9 |
| putative auto-transporter adhesin, head gin domain | SAMN04488524_0377 | Not Available | Positive | 515235 - 515969 | 25682.9 |
| predicted membrane protein | SAMN04488524_0378 | Not Available | Positive | 516022 - 518529 | 93639.6 |
| hypothetical protein | SAMN04488524_0379 | Not Available | Positive | 518519 - 519421 | 34490.9 |
| glutamine synthetase | SAMN04488524_0380 | Not Available | Positive | 519580 - 521766 | 81519.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

