Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (cmo5u34)-methyltransferase | SAMN04488524_3996 | Not Available | Positive | 4733408 - 4734130 | 27329.5 |
| two component transcriptional regulator, lyttr family | SAMN04488524_3997 | Not Available | Positive | 4734453 - 4735199 | 28588.0 |
| histidine kinase | SAMN04488524_3998 | Not Available | Positive | 4735287 - 4736369 | 41843.3 |
| protein of unknown function | SAMN04488524_3999 | Not Available | Negative | 4736458 - 4739007 | 94542.8 |
| thioredoxin-like | SAMN04488524_4000 | Not Available | Negative | 4739100 - 4740067 | 35672.5 |
| acyl-[acyl-carrier-protein] desaturase | SAMN04488524_4003 | Not Available | Positive | 4740576 - 4741556 | 38024.6 |
| methylmalonyl-coa mutase | SAMN04488524_4004 | Not Available | Negative | 4741613 - 4745005 | 126785.0 |
| type i phosphodiesterase / nucleotide pyrophosphatase | SAMN04488524_4005 | Not Available | Negative | 4745134 - 4746801 | 61977.4 |
| dihydrofolate synthase / folylpolyglutamate synthase | SAMN04488524_4006 | Not Available | Negative | 4746934 - 4748220 | 47230.2 |
| outer membrane transport energization protein tonb | SAMN04488524_4007 | Not Available | Negative | 4748263 - 4749084 | 28501.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

