Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncaracterized surface protein containing fasciclin (fas1) repeats | SAMN04488524_3966 | Not Available | Negative | 4683274 - 4684716 | 54443.2 |
| starch-binding associating with outer membrane | SAMN04488524_3967 | Not Available | Negative | 4684738 - 4686270 | 58287.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488524_3968 | Not Available | Negative | 4686286 - 4689516 | 120224.0 |
| uncaracterized surface protein containing fasciclin (fas1) repeats | SAMN04488524_3969 | Not Available | Negative | 4689536 - 4691464 | 71961.0 |
| sialidase-1 | SAMN04488524_3970 | Not Available | Negative | 4691454 - 4692644 | 43612.0 |
| dihydrodipicolinate synthase/n-acetylneuraminate lyase | SAMN04488524_3971 | Not Available | Negative | 4692676 - 4693605 | 34239.0 |
| dna-binding transcriptional regulator, fadr family | SAMN04488524_3972 | Not Available | Negative | 4693773 - 4694459 | 26262.5 |
| trehalose 6-phosphate synthase /trehalose 6-phosphatase | SAMN04488524_3973 | Not Available | Positive | 4694630 - 4696810 | 83535.4 |
| glucoamylase (glucan-1,4-alpha-glucosidase), gh15 family | SAMN04488524_3974 | Not Available | Negative | 4696814 - 4698607 | 69686.8 |
| cubico group peptidase, beta-lactamase class c family | SAMN04488524_3975 | Not Available | Negative | 4698694 - 4699851 | 43432.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

