Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5'-nucleotidase, c-terminal domain | SAMN04488524_3916 | Not Available | Negative | 4609002 - 4609760 | 27608.4 |
| glutathione peroxidase | SAMN04488524_3917 | Not Available | Negative | 4609773 - 4610285 | 19228.3 |
| dna topoisomerase i | SAMN04488524_3918 | Not Available | Positive | 4610696 - 4613254 | 95701.0 |
| hypothetical protein | SAMN04488524_3919 | Not Available | Positive | 4613254 - 4613658 | 15004.3 |
| endonuclease g | SAMN04488524_3920 | Not Available | Negative | 4613675 - 4615093 | 50174.8 |
| hypothetical protein | SAMN04488524_3921 | Not Available | Positive | 4615303 - 4620861 | 205412.0 |
| penicillin-binding protein 1c | SAMN04488524_3922 | Not Available | Positive | 4621016 - 4623397 | 89532.9 |
| uncharacterized membrane protein yhhn | SAMN04488524_3923 | Not Available | Negative | 4623394 - 4624086 | 26157.3 |
| rna recognition motif. (a.k.a. rrm, rbd, or rnp domain) | SAMN04488524_3924 | Not Available | Negative | 4624180 - 4624485 | 11145.2 |
| carboxymethylenebutenolidase | SAMN04488524_3925 | Not Available | Negative | 4624561 - 4625418 | 31004.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

