Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| integrase/recombinase xerd | SAMN04488524_3906 | Not Available | Positive | 4598648 - 4599547 | 33997.2 |
| release factor glutamine methyltransferase | SAMN04488524_3907 | Not Available | Negative | 4599551 - 4600417 | 32302.2 |
| diaminohydroxyphosphoribosylaminopyrimidine deaminase | SAMN04488524_3908 | Not Available | Positive | 4600466 - 4601518 | 39181.2 |
| hypothetical protein | SAMN04488524_3909 | Not Available | Positive | 4601515 - 4602372 | 32041.8 |
| uncharacterized protein, yigz family | SAMN04488524_3910 | Not Available | Positive | 4602372 - 4602986 | 22828.7 |
| uridine phosphorylase | SAMN04488524_3911 | Not Available | Positive | 4603007 - 4603873 | 31409.0 |
| hypothetical protein | SAMN04488524_3912 | Not Available | Positive | 4603948 - 4604268 | 11844.6 |
| alpha-1,2-mannosidase, putative | SAMN04488524_3913 | Not Available | Negative | 4604357 - 4606720 | 89662.6 |
| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase | SAMN04488524_3914 | Not Available | Positive | 4606982 - 4608073 | 40579.4 |
| 5'-nucleotidase | SAMN04488524_3915 | Not Available | Negative | 4608077 - 4609024 | 34652.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

