Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized membrane protein ypha, doxx/surf4 family | SAMN04488524_3844 | Not Available | Negative | 4540205 - 4540678 | 17998.8 |
| hypothetical protein | SAMN04488524_3845 | Not Available | Negative | 4541097 - 4541570 | 18380.1 |
| arac-type dna-binding protein | SAMN04488524_3846 | Not Available | Positive | 4541827 - 4542774 | 36116.3 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488524_3847 | Not Available | Negative | 4542820 - 4543476 | 25270.6 |
| hypothetical protein | SAMN04488524_3848 | Not Available | Positive | 4544209 - 4544862 | 24442.4 |
| hypothetical protein | SAMN04488524_3849 | Not Available | Positive | 4544880 - 4545521 | 23744.3 |
| Trna-lys | Not Available | Not Available | Positive | 4545648 - 4545723 | Not Available |
| hth-type transcriptional regulator / antitoxin higa | SAMN04488524_3852 | Not Available | Positive | 4545928 - 4546176 | 9649.69 |
| hypothetical protein | SAMN04488524_3853 | Not Available | Negative | 4546534 - 4547172 | 24268.2 |
| hypothetical protein | SAMN04488524_3854 | Not Available | Negative | 4547214 - 4547975 | 28673.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

