Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter africanus |
| Strain | strain DSM 12126 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1609729 bp
Thymine Count
1628936 bp
Guanine Count
1235949 bp
Cytosine Count
1248253 bp
Genome Length
5722867 bp
Protein-coding Genes
4691 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488524_3824 | Not Available | Positive | 4517539 - 4517877 | 13053.5 |
| hypothetical protein | SAMN04488524_3825 | Not Available | Positive | 4517927 - 4518496 | 21947.6 |
| mac/perforin domain-containing protein | SAMN04488524_3826 | Not Available | Positive | 4518596 - 4519627 | 38979.4 |
| Trna-lys | Not Available | Not Available | Positive | 4519673 - 4519748 | Not Available |
| activator of hsp90 atpase homolog 1-like protein | SAMN04488524_3828 | Not Available | Negative | 4519886 - 4520380 | 19410.9 |
| hypothetical protein | SAMN04488524_3829 | Not Available | Positive | 4520441 - 4521184 | 26948.7 |
| error-prone dna polymerase | SAMN04488524_3830 | Not Available | Negative | 4521211 - 4524387 | 119905.0 |
| protein imub | SAMN04488524_3831 | Not Available | Negative | 4524360 - 4525853 | 55792.6 |
| protein imua | SAMN04488524_3832 | Not Available | Negative | 4525855 - 4526595 | 27331.4 |
| alkylhydroperoxidase ahpd family core domain-containing protein | SAMN04488524_3833 | Not Available | Positive | 4526844 - 4527296 | 16946.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

